Transcriptional regulatory element prediction

http://edamontology.org/operation_0438

Identify or predict transcriptional regulatory motifs, patterns, elements or regions in DNA sequences.

Synonyms: Regulatory element prediction, Transcription regulatory element prediction, Conserved transcription regulatory sequence identification, Translational regulatory element prediction

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operations, edam

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beta12orEarlier

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This includes promoters, enhancers, silencers and boundary elements / insulators, regulatory protein or transcription factor binding sites etc. Methods might be specific to a particular genome and use motifs, word-based / grammatical methods, position-specific frequency matrices, discriminative pattern analysis etc.

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Subclass of:

Gene prediction
has topic some Transcription factors and regulatory sites