All terms in EDAM
Label |
Id |
Description |
FASTQ
|
format_1930 |
[FASTQ short read format ignoring quality scores.] |
FASTQ-illumina
|
format_1931 |
[FASTQ Illumina 1.3 short read format.] |
FASTA
|
format_1929 |
[FASTA format including NCBI-style IDs.] |
codata
|
format_1925 |
[Codata entry format.] |
dbid
|
format_1926 |
[Fasta format variant with database name before ID.] |
EMBL format
|
format_1927 |
[EMBL entry format.] |
EMBL-like (text)
|
format_2181 |
[A text format resembling EMBL entry format.] |
Staden experiment format
|
format_1928 |
[Staden experiment file format.] |
Trim to reference
|
operation_3191 |
[Trim sequences (typically from an automated DNA sequencer) to remove the sequence ends that extend beyond an assembled reference sequence.] |
Trim vector
|
operation_3190 |
[Trim sequences (typically from an automated DNA sequencer) to remove sequence-specific end regions, typically contamination from vector sequences.] |
Sequencing error detection
|
operation_3195 |
[Detect errors in DNA sequences generated from sequencing projects).] |
Sequence comparison
|
operation_2451 |
[Compare two or more molecular sequences.] |
Genome feature comparison
|
operation_3194 |
[Compare the features of two genome sequences.] |
Sequence feature comparison
|
operation_0256 |
[Compare the feature tables of two or more molecular sequences.] |
Genome analysis
|
operation_3918 |
[Detects chimeric sequences (chimeras) from a sequence alignment.] |
Sequence trimming
|
operation_3192 |
[Cut (remove) the end from a molecular sequence.] |
Sequence cutting
|
operation_0369 |
[Cut (remove) characters or a region from a molecular sequence.] |
Sequence contamination filtering
|
operation_3187 |
[Identify and filter a (typically large) sequence data set to remove sequences from contaminants in the sample that was sequenced.] |
Sequencing quality control
|
operation_3218 |
[Raw sequence data quality control.] |
Bisulfite mapping
|
operation_3186 |
[The mapping of methylation sites in a DNA (genome) sequence. Typically, the mapping of high-throughput bisulfite reads to the reference genome.] |